3D structure

PDB id
6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AUUG*CUUGAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6TB3|1|2|A|1230
6TB3|1|2|U|1231
6TB3|1|2|U|1232
6TB3|1|2|G|1233
*
6TB3|1|2|C|1252
6TB3|1|2|U|1253
6TB3|1|2|U|1254
6TB3|1|2|G|1255
6TB3|1|2|A|1256
6TB3|1|2|U|1257

Current chains

Chain 2
Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain C
40S ribosomal protein S10-A
Chain D
40S ribosomal protein S12
Chain M
40S ribosomal protein S29-A
Chain N
Ubiquitin-40S ribosomal protein S31

Coloring options:

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