IL_6TB3_070

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6TB3|1|2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_070 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.0951

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6TB3|1|2|C|1339
6TB3|1|2|U|1340
6TB3|1|2|A|1341
6TB3|1|2|C|1342
*
6TB3|1|2|G|1383
6TB3|1|2|A|1384
6TB3|1|2|G|1385

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain G

40S ribosomal protein S17-B

Chain J

40S ribosomal protein S20

Chain O

Guanine nucleotide-binding protein subunit beta-like protein