IL_6TB3_075
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6TB3|1|2|A|1516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_075 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.2734
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|2|G|1488
6TB3|1|2|U|1489
6TB3|1|2|C|1490
6TB3|1|2|U|1491
6TB3|1|2|A|1492
6TB3|1|2|A|1493
6TB3|1|2|C|1494
*
6TB3|1|2|G|1513
6TB3|1|2|U|1514
6TB3|1|2|A|1515
6TB3|1|2|A|1516
6TB3|1|2|U|1517
6TB3|1|2|C|1518
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain I
- 40S ribosomal protein S19-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
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