IL_6TB3_077

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_077 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.0728

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TB3|1|2|G|1540
6TB3|1|2|G|1541
6TB3|1|2|G|1542
6TB3|1|2|A|1543
6TB3|1|2|U|1544
6TB3|1|2|A|1545
*
6TB3|1|2|U|1566
6TB3|1|2|U|1567
6TB3|1|2|C|1568
6TB3|1|2|A|1569
6TB3|1|2|A|1570
6TB3|1|2|C|1571

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain K

40S ribosomal protein S25-A