IL_6TB3_081
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6TB3|1|2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_081 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3048
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6TB3|1|2|C|1644
6TB3|1|2|G|1645
6TB3|1|2|C|1646
6TB3|1|2|U|1647
*
6TB3|1|2|A|1753
6TB3|1|2|A|1754
6TB3|1|2|A|1755
6TB3|1|2|A|1756
6TB3|1|2|G|1757
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain AS
- 60S ribosomal protein L41-B
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 40S ribosomal protein S23-A
- Chain g
- 40S ribosomal protein S30-A
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