IL_6TB3_096
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6TB3|1|BQ|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_096 not in the Motif Atlas
- Homologous match to IL_8C3A_005
- Geometric discrepancy: 0.0605
- The information below is about IL_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6TB3|1|BQ|C|31
6TB3|1|BQ|U|32
6TB3|1|BQ|G|33
6TB3|1|BQ|A|34
6TB3|1|BQ|A|35
6TB3|1|BQ|C|36
6TB3|1|BQ|U|37
6TB3|1|BQ|U|38
*
6TB3|1|BQ|A|45
6TB3|1|BQ|U|46
6TB3|1|BQ|C|47
6TB3|1|BQ|A|48
6TB3|1|BQ|A|49
6TB3|1|BQ|U|50
6TB3|1|BQ|A|51
6TB3|1|BQ|A|52
6TB3|1|BQ|G|53
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
Coloring options: