IL_6TB3_101

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_101 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.2819

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6TB3|1|BQ|U|169
6TB3|1|BQ|G|170
*
6TB3|1|BQ|U|248
6TB3|1|BQ|U|249
6TB3|1|BQ|U|250
6TB3|1|BQ|G|251
6TB3|1|BQ|U|252
6TB3|1|BQ|A|253

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AJ

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L35-A