IL_6TB3_108

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

6TB3|1|BQ|U|447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|C|435
6TB3|1|BQ|A|436
6TB3|1|BQ|G|437
6TB3|1|BQ|A|438
6TB3|1|BQ|C|439
6TB3|1|BQ|A|440
6TB3|1|BQ|U|441
6TB3|1|BQ|G|442
6TB3|1|BQ|G|443
6TB3|1|BQ|U|444
6TB3|1|BQ|G|445
6TB3|1|BQ|U|446
6TB3|1|BQ|U|447
6TB3|1|BQ|U|448
6TB3|1|BQ|U|449
6TB3|1|BQ|G|450
6TB3|1|BQ|U|451
6TB3|1|BQ|A|486
6TB3|1|BQ|U|487
6TB3|1|BQ|U|488
6TB3|1|BQ|U|489
6TB3|1|BQ|C|490
6TB3|1|BQ|A|491
6TB3|1|BQ|C|492
6TB3|1|BQ|U|493
6TB3|1|BQ|G|494
6TB3|1|BQ|G|495
*
6TB3|1|BQ|C|618
6TB3|1|BQ|A|619
6TB3|1|BQ|U|620
6TB3|1|BQ|A|621
6TB3|1|BQ|A|622
6TB3|1|BQ|U|623
6TB3|1|BQ|G|624

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BG

60S ribosomal protein L32

Chain BK

60S ribosomal protein L33-A

Chain BM

60S ribosomal protein L6-B