IL_6TB3_122

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_122 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.0857

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6TB3|1|BQ|G|869
6TB3|1|BQ|G|870
6TB3|1|BQ|U|871
6TB3|1|BQ|U|872
*
6TB3|1|BQ|A|888
6TB3|1|BQ|U|889
6TB3|1|BQ|C|890

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain BA

60S ribosomal protein L3