IL_6TB3_133

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_133 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.0864

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6TB3|1|BQ|A|1009
6TB3|1|BQ|G|1010
6TB3|1|BQ|A|1011
*
6TB3|1|BQ|U|1039
6TB3|1|BQ|A|1040
6TB3|1|BQ|U|1041

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5