IL_6TB3_146

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_146 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.2188

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6TB3|1|BQ|G|1262
6TB3|1|BQ|A|1263
6TB3|1|BQ|G|1264
6TB3|1|BQ|U|1265
6TB3|1|BQ|G|1266
*
6TB3|1|BQ|C|1275
6TB3|1|BQ|U|1276
6TB3|1|BQ|C|1277

Current chains

Chain BQ

25S rRNA

Nearby chains