IL_6TB3_154

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGA*UGCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|C|1563
6TB3|1|BQ|U|1564
6TB3|1|BQ|G|1565
6TB3|1|BQ|A|1566
*
6TB3|1|BQ|U|1572
6TB3|1|BQ|G|1573
6TB3|1|BQ|C|1574
6TB3|1|BQ|A|1575
6TB3|1|BQ|G|1576

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BS

5.8S ribosomal RNA; 5.8S rRNA

Chain BV

60S ribosomal protein L41-A