IL_6TB3_170

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_170 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.0712

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6TB3|1|BQ|G|1940
6TB3|1|BQ|C|1941
6TB3|1|BQ|U|1942
*
6TB3|1|BQ|A|2106
6TB3|1|BQ|A|2107
6TB3|1|BQ|C|2108

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain BF

60S ribosomal protein L19-A

Chain V

40S ribosomal protein S8