IL_6TB3_174

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6TB3|1|BQ|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_174 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0775

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6TB3|1|BQ|C|2196
6TB3|1|BQ|C|2197
6TB3|1|BQ|A|2198
6TB3|1|BQ|G|2199
*
6TB3|1|BQ|C|2245
6TB3|1|BQ|G|2246

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AW

60S ribosomal protein L2-A

Chain BW

General negative regulator of transcription subunit 5