IL_6TB3_176

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

6TB3|1|BQ|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|C|2204
6TB3|1|BQ|U|2205
6TB3|1|BQ|G|2206
6TB3|1|BQ|A|2207
6TB3|1|BQ|A|2208
6TB3|1|BQ|U|2209
6TB3|1|BQ|G|2210
*
6TB3|1|BQ|C|2235
6TB3|1|BQ|G|2236
6TB3|1|BQ|C|2237
6TB3|1|BQ|G|2238

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AW

60S ribosomal protein L2-A

Chain BW

General negative regulator of transcription subunit 5

Chain Q

40S ribosomal protein S1-A