IL_6TB3_185

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUAGA*UUUAUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|C|2444
6TB3|1|BQ|A|2445
6TB3|1|BQ|U|2446
6TB3|1|BQ|A|2447
6TB3|1|BQ|G|2448
6TB3|1|BQ|A|2449
*
6TB3|1|BQ|U|2497
6TB3|1|BQ|U|2498
6TB3|1|BQ|U|2499
6TB3|1|BQ|A|2500
6TB3|1|BQ|U|2501
6TB3|1|BQ|A|2502
6TB3|1|BQ|G|2503

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain Q

40S ribosomal protein S1-A