IL_6TB3_187

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGUAGAAUAAG*CUAC

Length

16 nucleotides

Bulged bases

6TB3|1|BQ|U|2453, 6TB3|1|BQ|G|2454, 6TB3|1|BQ|A|2458, 6TB3|1|BQ|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|G|2452
6TB3|1|BQ|U|2453
6TB3|1|BQ|G|2454
6TB3|1|BQ|U|2455
6TB3|1|BQ|A|2456
6TB3|1|BQ|G|2457
6TB3|1|BQ|A|2458
6TB3|1|BQ|A|2459
6TB3|1|BQ|U|2460
6TB3|1|BQ|A|2461
6TB3|1|BQ|A|2462
6TB3|1|BQ|G|2463
*
6TB3|1|BQ|C|2492
6TB3|1|BQ|U|2493
6TB3|1|BQ|A|2494
6TB3|1|BQ|C|2495

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein L1-A