IL_6TB3_188

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

6TB3|1|BQ|A|2484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|G|2466
6TB3|1|BQ|G|2467
6TB3|1|BQ|A|2468
6TB3|1|BQ|G|2469
*
6TB3|1|BQ|C|2476
6TB3|1|BQ|G|2477
6TB3|1|BQ|C|2478
6TB3|1|BQ|C|2479
6TB3|1|BQ|A|2480
6TB3|1|BQ|G|2481
6TB3|1|BQ|U|2482
6TB3|1|BQ|G|2483
6TB3|1|BQ|A|2484
6TB3|1|BQ|A|2485
6TB3|1|BQ|A|2486
6TB3|1|BQ|U|2487
6TB3|1|BQ|A|2488
6TB3|1|BQ|C|2489

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein L1-A