IL_6TB3_198

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_198 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1162

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6TB3|1|BQ|U|2835
6TB3|1|BQ|C|2836
6TB3|1|BQ|A|2837
6TB3|1|BQ|A|2838
6TB3|1|BQ|G|2839
*
6TB3|1|BQ|C|2849
6TB3|1|BQ|G|2850
6TB3|1|BQ|A|2851
6TB3|1|BQ|C|2852
6TB3|1|BQ|A|2853

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BD

60S ribosomal protein L10