IL_6TB3_205

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6TB3|1|BQ|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_205 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2464

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6TB3|1|BQ|C|2960
6TB3|1|BQ|G|2961
*
6TB3|1|BQ|C|2970
6TB3|1|BQ|A|2971
6TB3|1|BQ|G|2972

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AW

60S ribosomal protein L2-A

Chain BD

60S ribosomal protein L10

Chain n

Transfer RNA; tRNA