IL_6TB3_223

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

6TB3|1|BQ|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_223 not in the Motif Atlas

Homologous match to IL_5TBW_131

Geometric discrepancy: 0.2627

The information below is about IL_5TBW_131

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6TB3|1|BQ|C|3324
6TB3|1|BQ|G|3325
*
6TB3|1|BQ|U|3381
6TB3|1|BQ|U|3382
6TB3|1|BQ|G|3383

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A