IL_6TB3_245
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUU*AGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_245 not in the Motif Atlas
- Homologous match to IL_8C3A_050
- Geometric discrepancy: 0.062
- The information below is about IL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
6TB3|1|BQ|U|1123
6TB3|1|BQ|U|1124
6TB3|1|BQ|U|1125
*
6TB3|1|BQ|A|1133
6TB3|1|BQ|G|1134
6TB3|1|BQ|A|1135
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BD
- 60S ribosomal protein L10
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
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