IL_6TBV_015

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_015 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0753

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6TBV|1|16S1|C|132
6TBV|1|16S1|U|133
6TBV|1|16S1|G|134
6TBV|1|16S1|C|135
6TBV|1|16S1|C|136
*
6TBV|1|16S1|G|227
6TBV|1|16S1|A|228
6TBV|1|16S1|U|229
6TBV|1|16S1|G|230

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S161

30S ribosomal protein S16

Chain S201

30S ribosomal protein S20