IL_6TBV_025

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_025 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0813

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6TBV|1|16S1|U|409
6TBV|1|16S1|G|410
6TBV|1|16S1|A|411
6TBV|1|16S1|A|412
6TBV|1|16S1|G|413
6TBV|1|16S1|A|414
6TBV|1|16S1|A|415
6TBV|1|16S1|G|416
*
6TBV|1|16S1|U|427
6TBV|1|16S1|G|428
6TBV|1|16S1|U|429
6TBV|1|16S1|A|430
6TBV|1|16S1|A|431
6TBV|1|16S1|A|432
6TBV|1|16S1|G|433

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S041

30S ribosomal protein S4