IL_6TBV_027

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6TBV|1|16S1|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_027 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0713

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6TBV|1|16S1|G|446
6TBV|1|16S1|G|447
6TBV|1|16S1|A|448
6TBV|1|16S1|G|449
6TBV|1|16S1|G|450
*
6TBV|1|16S1|C|483
6TBV|1|16S1|G|484
6TBV|1|16S1|U|485
6TBV|1|16S1|U|486
6TBV|1|16S1|A|487
6TBV|1|16S1|C|488

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S041

30S ribosomal protein S4

Chain S161

30S ribosomal protein S16