IL_6TBV_063

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_063 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.095

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6TBV|1|16S1|C|1303
6TBV|1|16S1|G|1304
6TBV|1|16S1|G|1305
6TBV|1|16S1|A|1306
6TBV|1|16S1|U|1307
6TBV|1|16S1|U|1308
*
6TBV|1|16S1|A|1329
6TBV|1|16S1|U|1330
6TBV|1|16S1|G|1331
6TBV|1|16S1|A|1332
6TBV|1|16S1|A|1333
6TBV|1|16S1|G|1334

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S131

30S ribosomal protein S13