IL_6TBV_066

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

6TBV|1|16S1|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_066 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.4708

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6TBV|1|16S1|G|1405
6TBV|1|16S1|U|1406
6TBV|1|16S1|5MC|1407
6TBV|1|16S1|A|1408
6TBV|1|16S1|C|1409
*
6TBV|1|16S1|G|1491
6TBV|1|16S1|A|1492
6TBV|1|16S1|A|1493
6TBV|1|16S1|G|1494
6TBV|1|16S1|U|1495
6TBV|1|16S1|C|1496

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain MRN1

mRNA

Chain S121

30S ribosomal protein S12