IL_6TBV_077

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_077 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0531

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6TBV|1|23S1|G|188
6TBV|1|23S1|G|189
6TBV|1|23S1|A|190
6TBV|1|23S1|A|191
6TBV|1|23S1|C|192
6TBV|1|23S1|U|193
6TBV|1|23S1|G|194
*
6TBV|1|23S1|C|201
6TBV|1|23S1|U|202
6TBV|1|23S1|A|203
6TBV|1|23S1|A|204
6TBV|1|23S1|G|205
6TBV|1|23S1|U|206
6TBV|1|23S1|A|207
6TBV|1|23S1|C|208

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L281

50S ribosomal protein L28