IL_6TBV_106

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6TBV|1|23S1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_106 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0663

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6TBV|1|23S1|U|1018
6TBV|1|23S1|U|1019
6TBV|1|23S1|A|1020
6TBV|1|23S1|A|1021
6TBV|1|23S1|G|1022
6TBV|1|23S1|U|1023
6TBV|1|23S1|G|1024
*
6TBV|1|23S1|C|1140
6TBV|1|23S1|U|1141
6TBV|1|23S1|A|1142
6TBV|1|23S1|A|1143
6TBV|1|23S1|A|1144

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L131

50S ribosomal protein L13

Chain L361

50S ribosomal protein L36