IL_6TBV_120

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_120 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0613

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6TBV|1|23S1|C|1357
6TBV|1|23S1|G|1358
6TBV|1|23S1|A|1359
6TBV|1|23S1|G|1360
6TBV|1|23S1|G|1361
*
6TBV|1|23S1|C|1370
6TBV|1|23S1|G|1371
6TBV|1|23S1|U|1372
6TBV|1|23S1|A|1373
6TBV|1|23S1|G|1374

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2

Chain L281

50S ribosomal protein L28

Chain L341

50S ribosomal protein L34