IL_6TBV_135

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6TBV|1|23S1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_135 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0683

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|C|1686
6TBV|1|23S1|G|1687
6TBV|1|23S1|U|1688
6TBV|1|23S1|A|1689
6TBV|1|23S1|A|1690
6TBV|1|23S1|C|1691
*
6TBV|1|23S1|G|1696
6TBV|1|23S1|G|1697
6TBV|1|23S1|A|1698
6TBV|1|23S1|G|1699
6TBV|1|23S1|A|1700
6TBV|1|23S1|A|1701
6TBV|1|23S1|G|1702

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L021

50S ribosomal protein L2