IL_6TBV_146
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6TBV|1|23S1|A|1938, 6TBV|1|23S1|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TBV_146 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1418
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6TBV|1|23S1|C|1934
6TBV|1|23S1|G|1935
6TBV|1|23S1|A|1936
6TBV|1|23S1|A|1937
6TBV|1|23S1|A|1938
6TBV|1|23S1|5MU|1939
6TBV|1|23S1|U|1940
6TBV|1|23S1|C|1941
6TBV|1|23S1|C|1942
6TBV|1|23S1|U|1943
6TBV|1|23S1|U|1944
6TBV|1|23S1|G|1945
*
6TBV|1|23S1|C|1961
6TBV|1|23S1|5MC|1962
6TBV|1|23S1|U|1963
6TBV|1|23S1|G|1964
Current chains
- Chain 23S1
- 23S rRNA
Nearby chains
- Chain 16S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain L021
- 50S ribosomal protein L2
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