IL_6TBV_148

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6TBV|1|23S1|C|2055, 6TBV|1|23S1|U|2613, 6TBV|1|23S1|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_148 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0935

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6TBV|1|23S1|A|2054
6TBV|1|23S1|C|2055
6TBV|1|23S1|G|2056
*
6TBV|1|23S1|C|2612
6TBV|1|23S1|U|2613
6TBV|1|23S1|A|2614
6TBV|1|23S1|U|2615

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L221

50S ribosomal protein L22

Chain L321

50S ribosomal protein L32

Chain SPE1

SpeFL