3D structure

PDB id
6TBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GU(G7M)A*UCC
Length
7 nucleotides
Bulged bases
6TBV|1|23S1|U|2068
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6TBV_150 not in the Motif Atlas
Homologous match to IL_5J7L_323
Geometric discrepancy: 0.0972
The information below is about IL_5J7L_323
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6TBV|1|23S1|G|2067
6TBV|1|23S1|U|2068
6TBV|1|23S1|G7M|2069
6TBV|1|23S1|A|2070
*
6TBV|1|23S1|U|2441
6TBV|1|23S1|C|2442
6TBV|1|23S1|C|2443

Current chains

Chain 23S1
23S rRNA

Nearby chains

Chain L041
50S ribosomal protein L4
Chain L151
50S ribosomal protein L15
Chain SPE1
SpeFL

Coloring options:


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