IL_6TBV_158

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6TBV|1|23S1|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_158 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3157

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6TBV|1|23S1|C|2129
6TBV|1|23S1|U|2130
6TBV|1|23S1|U|2131
6TBV|1|23S1|U|2132
6TBV|1|23S1|G|2133
6TBV|1|23S1|A|2134
6TBV|1|23S1|A|2135
6TBV|1|23S1|G|2136
*
6TBV|1|23S1|U|2155
6TBV|1|23S1|G|2156
6TBV|1|23S1|G|2157
6TBV|1|23S1|A|2158
6TBV|1|23S1|G|2159

Current chains

Chain 23S1

23S rRNA

Nearby chains