IL_6TBV_183

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_183 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.058

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|U|2847
6TBV|1|23S1|G|2848
6TBV|1|23S1|U|2849
6TBV|1|23S1|A|2850
6TBV|1|23S1|A|2851
6TBV|1|23S1|G|2852
*
6TBV|1|23S1|U|2865
6TBV|1|23S1|U|2866
6TBV|1|23S1|G|2867
6TBV|1|23S1|A|2868
6TBV|1|23S1|G|2869

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L171

50S ribosomal protein L17

Chain L191

50S ribosomal protein L19