IL_6TBV_189

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6TBV|1|23S1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_189 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1087

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6TBV|1|23S1|A|844
6TBV|1|23S1|A|845
6TBV|1|23S1|U|846
6TBV|1|23S1|U|847
6TBV|1|23S1|C|848
*
6TBV|1|23S1|G|930
6TBV|1|23S1|U|931
6TBV|1|23S1|U|932
6TBV|1|23S1|A|933
6TBV|1|23S1|U|934

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L301

50S ribosomal protein L30