IL_6TF1_002

3D structure

PDB id

6TF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP)

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UG*CGA

Length

5 nucleotides

Bulged bases

6TF1|1|A|G|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TF1_002 not in the Motif Atlas

Homologous match to IL_6TFF_002

Geometric discrepancy: 0.0581

The information below is about IL_6TFF_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

6TF1|1|A|U|22
6TF1|1|A|G|23
*
6TF1|1|A|C|37
6TF1|1|A|G|38
6TF1|1|A|A|39

Current chains

Chain A

Chains: A

Nearby chains