IL_6TF3_003

3D structure

PDB id

6TF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP)

Experimental method

X-RAY DIFFRACTION

Resolution

2.66 Å

Loop

Sequence

GGG*CAGC

Length

7 nucleotides

Bulged bases

6TF3|1|A|G|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TF3_003 not in the Motif Atlas

Homologous match to IL_6TFF_003

Geometric discrepancy: 0.0424

The information below is about IL_6TFF_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6TF3|1|A|G|23
6TF3|1|A|G|24
6TF3|1|A|G|25
*
6TF3|1|A|C|34
6TF3|1|A|A|35
6TF3|1|A|G|36
6TF3|1|A|C|37

Current chains

Chain A

Chains: A

Nearby chains