IL_6TFG_001

3D structure

PDB id

6TFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS)

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

AACAACCCCG*CU

Length

12 nucleotides

Bulged bases

6TFG|1|A|A|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TFG_001 not in the Motif Atlas

Homologous match to IL_6TFF_001

Geometric discrepancy: 0.0334

The information below is about IL_6TFF_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04650.4

Basepair signature

cWW-cSH-cWW-L-L-R-L-R-L

Number of instances in this motif group

4

Unit IDs

6TFG|1|A|A|7
6TFG|1|A|A|8
6TFG|1|A|C|9
6TFG|1|A|A|10
6TFG|1|A|A|11
6TFG|1|A|C|12
6TFG|1|A|C|13
6TFG|1|A|C|14
6TFG|1|A|C|15
6TFG|1|A|G|16
*
6TFG|1|A|C|45
6TFG|1|A|U|46

Current chains

Chain A

Chains: A

Nearby chains