IL_6TH6_063

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_063 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.0891

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TH6|1|BA|G|33
6TH6|1|BA|U|34
6TH6|1|BA|G|35
6TH6|1|BA|G|36
6TH6|1|BA|A|37
6TH6|1|BA|U|38
6TH6|1|BA|G|39
*
6TH6|1|BA|C|547
6TH6|1|BA|U|548
6TH6|1|BA|G|549
6TH6|1|BA|A|550
6TH6|1|BA|A|551
6TH6|1|BA|A|552
6TH6|1|BA|C|553

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BV

50S ribosomal protein L22

Chain Bd

50S ribosomal protein L32e