IL_6TH6_089

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAGG*CG

Length

6 nucleotides

Bulged bases

6TH6|1|BA|A|734, 6TH6|1|BA|G|735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_089 not in the Motif Atlas

Homologous match to IL_4V9F_021

Geometric discrepancy: 0.1521

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6TH6|1|BA|C|733
6TH6|1|BA|A|734
6TH6|1|BA|G|735
6TH6|1|BA|G|736
*
6TH6|1|BA|C|761
6TH6|1|BA|G|762

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e