IL_6TH6_097

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

C(OMG)C*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_097 not in the Motif Atlas

Geometric match to IL_3R1C_032

Geometric discrepancy: 0.1342

The information below is about IL_3R1C_032

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

6TH6|1|BA|C|942
6TH6|1|BA|OMG|943
6TH6|1|BA|C|944
*
6TH6|1|BA|G|1327
6TH6|1|BA|C|1328
6TH6|1|BA|G|1329

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e

Chain Bd

50S ribosomal protein L32e