IL_6TH6_129

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGGAAAC*GGC

Length

10 nucleotides

Bulged bases

6TH6|1|BA|G|1800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_129 not in the Motif Atlas

Geometric match to IL_5J7L_304

Geometric discrepancy: 0.3055

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6TH6|1|BA|G|1798
6TH6|1|BA|G|1799
6TH6|1|BA|G|1800
6TH6|1|BA|A|1801
6TH6|1|BA|A|1802
6TH6|1|BA|A|1803
6TH6|1|BA|C|1804
*
6TH6|1|BA|G|2117
6TH6|1|BA|G|2118
6TH6|1|BA|C|2119

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e