IL_6TH6_145

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AAG*CUAU

Length

7 nucleotides

Bulged bases

6TH6|1|BA|A|2167, 6TH6|1|BA|U|2717, 6TH6|1|BA|A|2718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_145 not in the Motif Atlas

Homologous match to IL_4V9F_073

Geometric discrepancy: 0.1875

The information below is about IL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6TH6|1|BA|A|2166
6TH6|1|BA|A|2167
6TH6|1|BA|G|2168
*
6TH6|1|BA|C|2716
6TH6|1|BA|U|2717
6TH6|1|BA|A|2718
6TH6|1|BA|U|2719

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22