IL_6TH6_148

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6TH6|1|BA|G|2340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_148 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.142

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6TH6|1|BA|C|2193
6TH6|1|BA|A|2194
6TH6|1|BA|G|2195
*
6TH6|1|BA|U|2338
6TH6|1|BA|G|2339
6TH6|1|BA|G|2340
6TH6|1|BA|G|2341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e