IL_6TH6_151

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCGCAGCGUAG*CC

Length

13 nucleotides

Bulged bases

6TH6|1|BA|C|2223, 6TH6|1|BA|U|2230

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_151 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2155

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6TH6|1|BA|G|2222
6TH6|1|BA|C|2223
6TH6|1|BA|G|2224
6TH6|1|BA|C|2225
6TH6|1|BA|A|2226
6TH6|1|BA|G|2227
6TH6|1|BA|C|2228
6TH6|1|BA|G|2229
6TH6|1|BA|U|2230
6TH6|1|BA|A|2231
6TH6|1|BA|G|2232
*
6TH6|1|BA|C|2290
6TH6|1|BA|C|2291

Current chains

Chain BA

23S ribosomal RNA

Nearby chains