IL_6TH6_155

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGC*GCAC

Length

7 nucleotides

Bulged bases

6TH6|1|BA|A|2360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_155 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.278

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6TH6|1|BA|G|2348
6TH6|1|BA|G|2349
6TH6|1|BA|C|2350
*
6TH6|1|BA|G|2358
6TH6|1|BA|C|2359
6TH6|1|BA|A|2360
6TH6|1|BA|C|2361

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain BU

50S ribosomal protein L21e