IL_6TH6_156

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6TH6|1|BA|A|2449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_156 not in the Motif Atlas

Geometric match to IL_5TBW_013

Geometric discrepancy: 0.3291

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6TH6|1|BA|G|2448
6TH6|1|BA|A|2449
6TH6|1|BA|C|2450
*
6TH6|1|BA|G|2476
6TH6|1|BA|C|2477

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Bl

50S ribosomal protein L44e