IL_6TH6_163

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6TH6|1|BA|G|2680, 6TH6|1|BA|A|2681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_163 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1446

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6TH6|1|BA|C|2614
6TH6|1|BA|U|2615
6TH6|1|BA|C|2616
*
6TH6|1|BA|G|2678
6TH6|1|BA|U|2679
6TH6|1|BA|G|2680
6TH6|1|BA|A|2681
6TH6|1|BA|G|2682

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14